Material Type:
Rice University
Amniote, Cephalochordata, Chordata, Chordate, Craniata, Craniate, Cranium, Dorsal Hollow Nerve Cord, Lancelet, Notochord, Pharyngeal Slits, Post-anal Tail, Tetrapod, Tunicate, Urochordata, Vertebral Column, Vertebrata, Vertebrate, Vertebrates



By the end of this section, you will be able to do the following:
  • Describe the distinguishing characteristics of chordates
  • Identify the derived characters of craniates that sets them apart from other chordates
  • Describe the developmental fate of the notochord in vertebrates

Vertebrates are members of the kingdom Animalia and the phylum Chordata (Figure). Recall that animals that possess bilateral symmetry can be divided into two groups—protostomes and deuterostomes—based on their patterns of embryonic development. The deuterostomes, whose name translates as “second mouth,” consist of two major phyla: Echinodermata and Chordata. Echinoderms are invertebrate marine animals that have pentaradial symmetry and a spiny body covering, a group that includes sea stars, sea urchins, and sea cucumbers. The most conspicuous and familiar members of Chordata are vertebrates, but this phylum also includes two groups of invertebrate chordates.

The deuterostome phylogenetic tree includes Echinodermata and chordata. Chordates possess an notochord and include chephalochordates (lancelets), urochordata (tunicates) craniata, which have a cranium. Craniata includes the Myxini (hagfish) and vertebrata, which possess a vertebral column. Vertebrata includes the Petromyzontida (lampreys) and Gnathostomes, which possess a jaw. Gnathostomes include Actinopterygii (ray finned fishes) and animals with four limbs. Animals with four limbs include Actinistia (coelacanths) , dipnoi (lungfishes) and tetrapods, or animals with four legs. Tetrapods include amphibian (frogs and salamanders) and Amniotic, which possess an amniotic egg. Amniota includes reptilian (turtles, snakes, crocodiles and birds) and mammalia, or animals that produce milk.
Deuterostome phylogeny. All chordates are deuterostomes possessing a notochord at some stage of their life cycle.

Characteristics of Chordata

Animals in the phylum Chordata share five key chacteristics that appear at some stage during their development: a notochord, a dorsal hollow (tubular) nerve cord, pharyngeal gill arches or slits, a post-anal tail, and an endostyle/thyroid gland (Figure). In some groups, some of these key chacteristics are present only during embryonic development.

The chordates are named for the notochord, which is a flexible, rod-shaped mesodermal structure that is found in the embryonic stage of all chordates and in the adult stage of some chordate species. It is strengthened with glycoproteins similar to cartilage and covered with a collagenous sheath. The notocord is located between the digestive tube and the nerve cord, and provides rigid skeletal support as well as a flexible location for attachment of axial muscles. In some chordates, the notochord acts as the primary axial support of the body throughout the animal’s lifetime. However, in vertebrates (craniates), the notochord is present only during embryonic development, at which time it induces the development of the neural tube and serves as a support for the developing embryonic body. The notochord, however, is not found in the postembryonic stages of vertebrates; at this point, it has been replaced by the vertebral column (that is, the spine).

Art Connection

The illustration shows a fish-shaped chordate. A long, thin dorsal hollow nerve cord runs the length of the chordate, along the top. Immediately beneath the nerve cord is a notochord that also runs the length of the organism. Beneath the notochord, pharyngeal slits cut diagonally into tissue toward the front of the organism. A post-anal tail occurs at the rear.
Chordate features. In chordates, four common features appear at some point during development: a notochord, a dorsal hollow nerve cord, pharyngeal slits, and a post-anal tail. The endostyle is embedded in the floor of the pharynx.

Which of the following statements about common features of chordates is true?

  1. The dorsal hollow nerve cord is part of the chordate central nervous system.
  2. In vertebrate fishes, the pharyngeal slits become the gills.
  3. Humans are not chordates because humans do not have a tail.
  4. Vertebrates do not have a notochord at any point in their development; instead, they have a vertebral column.
  5. The endostyle secretes steroid hormones.

The dorsal hollow nerve cord is derived from ectoderm that rolls into a hollow tube during development. In chordates, it is located dorsally to the notochord. In contrast, the nervous system in protostome animal phyla is characterized by solid nerve cords that are located either ventrally and/or laterally to the gut. In vertebrates, the neural tube develops into the brain and spinal cord, which together comprise the central nervous system (CNS). The peripheral nervous system (PNS) refers to the peripheral nerves (including the cranial nerves) lying outside of the brain and spinal cord.

Pharyngeal slits are openings in the pharynx (the region just posterior to the mouth) that extend to the outside environment. In organisms that live in aquatic environments, pharyngeal slits allow for the exit of water that enters the mouth during feeding. Some invertebrate chordates use the pharyngeal slits to filter food out of the water that enters the mouth. The endostyle is a strip of ciliated mucus-producing tissue in the floor of the pharynx. Food particles trapped in the mucus are moved along the endostyle toward the gut. The endostyle also produces substances similar to thyroid hormones and is homologous with the thyroid gland in vertebrates. In vertebrate fishes, the pharyngeal slits are modified into gill supports, and in jawed fishes, into jaw supports. In tetrapods (land vertebrates), the slits are highly modified into components of the ear, and tonsils and thymus glands. In other vertebrates, pharyngeal arches, derived from all three germ layers, give rise to the oral jaw from the first pharyngeal arch, with the second arch becoming the hyoid and jaw support.

The post-anal tail is a posterior elongation of the body, extending beyond the anus. The tail contains skeletal elements and muscles, which provide a source of locomotion in aquatic species, such as fishes. In some terrestrial vertebrates, the tail also helps with balance, courting, and signaling when danger is near. In humans and other great apes, the post-anal tail is reduced to a vestigial coccyx (“tail bone”) that aids in balance during sitting.

Link to Learning

Click for a video discussing the evolution of chordates and five characteristics that they share.

Chordates and the Evolution of Vertebrates

Two clades of chordates are invertebrates: Cephalochordata and Urochordata. Members of these groups also possess the five distinctive features of chordates at some point during their development.


Members of Cephalochordata possess a notochord, dorsal hollow tubular nerve cord, pharyngeal slits, endostyle/thyroid gland, and a post-anal tail in the adult stage (Figure). The notochord extends into the head, which gives the subphylum its name. Although the neural tube also extends into the head region, there is no well-defined brain, and the nervous system is centered around a hollow nerve cord lying above the notochord. Extinct members of this subphylum include Pikaia, which is the oldest known cephalochordate. Excellently preserved Pikaia fossils were recovered from the Burgess shales of Canada and date to the middle of the Cambrian age, making them more than 500 million years old. Its anatomy of Pikaia closely resembles that of the extant lancelet in the genus Branchiostoma.

The lancelets are named for their bladelike shape. Lancelets are only a few centimeters long and are usually found buried in sand at the bottom of warm temperate and tropical seas. Cephalochordates are suspension feeders. A water current is created by cilia in the mouth, and is filtered through oral tentacles. Water from the mouth then enters the pharyngeal slits, which filter out food particles. The filtered water collects in a gill chamber called the atrium and exits through the atriopore. Trapped food particles are caught in a stream of mucus produced by the endostyle in a ventral ciliated fold (or groove) of the pharynx and carried to the gut. Most gas exchange occurs across the body surface. Sexes are separate and gametes are released into the water through the atriopore for external fertilization.

The illustration shows a lancelet with a head protruding form the sand, and the rest of the body buried. On the head, tentacles surround the mouth. The mouth leads to a digestive tract. The anus is just before the post anal tail. The pharyngeal slits are next to the atrium, which empties into the atriopore. The body has segmented muscles running along it from top to bottom.
Cephalochordate anatomy. In the lancelet and other cephalochordates, the notochord extends into the head region. Adult lancelets retain all five key characteristics of chordates: a notochord, a dorsal hollow nerve cord, pharyngeal slits, an endostyle, and a post-anal tail.


The 1,600 species of Urochordata are also known as tunicates (Figure). The name tunicate derives from the cellulose-like carbohydrate material, called the tunic, which covers the outer body of tunicates. Although tunicates are classified as chordates, the adults do not have a notochord, a dorsal hollow nerve cord, or a post-anal tail, although they do have pharyngeal slits and an endostyle. The “tadpole” larval form, however, possesses all five structures. Most tunicates are hermaphrodites; their larvae hatch from eggs inside the adult tunicate’s body. After hatching, a tunicate larva (possessing all five chordate features) swims for a few days until it finds a suitable surface on which it can attach, usually in a dark or shaded location. It then attaches via the head to the surface and undergoes metamorphosis into the adult form, at which point the notochord, nerve cord, and tail disappear, leaving the pharyngeal gill slits and the endostyle as the two remaining features of its chordate morphology.

Photo A shows tunicates, which are sponge-like in appearance and have holes along the surface. Illustration B shows the tunicate larval stage, which resembles a tadpole, with a post anal tail at the narrow end. A dorsal hollow nerve cord run along the upper back, and a notochord runs beneath the nerve cord. The digestive tract starts with a mouth at the front of the animal connected to a stomach. Above the stomach is the anus. The pharyngeal slits, which are located in between the stomach and mouth, are connected to an atrial opening at the top of the body. Illustration C shows an adult tunicate, which resembles a tree stump anchored to the bottom. Water enters through a mouth at the top of the body and passes through the pharyngeal slits, where it is filtered. Water then exits through another opening at the side of the body. A heart, stomach and gonad are tucked beneath the pharyngeal slit.
Urochordate anatomy. (a) This photograph shows a colony of the tunicate Botrylloides violaceus. (b) The larval stage of the tunicate possesses all of the features characteristic of chordates: a notochord, a dorsal hollow nerve cord, pharyngeal slits, an endostyle, and a post-anal tail. (c) In the adult stage, the notochord, nerve cord, and tail disappear, leaving just the pharyngeal slits and endostyle. (credit: modification of work by Dann Blackwood, USGS)

Adult tunicates may be either solitary or colonial forms, and some species may reproduce by budding. Most tunicates live a sessile existence on the ocean floor and are suspension feeders. However, chains of thaliacean tunicates called salps (Figure) can swim actively while feeding, propelling themselves as they move water through the pharyngeal slits. The primary foods of tunicates are plankton and detritus. Seawater enters the tunicate’s body through its incurrent siphon. Suspended material is filtered out of this water by a mucous net produced by the endostyle and is passed into the intestine via the action of cilia. The anus empties into the excurrent siphon, which expels wastes and water. Tunicates are found in shallow ocean waters around the world.

The image displays a group of salps near a coral reef.
Salps. These colonial tunicates feed on phytoplankton. Salps are sequential hermaphrodites, with younger female colonies fertilized by older male colonies. (credit: Oregon Department of Fish & Wildlife via Wikimedia Commons)

Subphylum Vertebrata (Craniata)

A cranium is a bony, cartilaginous, or fibrous structure surrounding the brain, jaw, and facial bones (Figure). Most bilaterally symmetrical animals have a head; of these, those that have a cranium comprise the clade Craniata/Vertebrata, which includes the primitively jawless Myxini (hagfishes), Petromyzontida (lampreys), and all of the organisms called “vertebrates.” (We should note that the Myxini have a cranium but lack a backbone.)

The skull wraps around the upper part of the head. The mandible is the lower jaw. Other bones complete the skull.
A craniate skull. The subphylum Craniata (or Vertebrata), including this placoderm fish (Dunkleosteus sp.), are characterized by the presence of a cranium, mandible, and other facial bones. (credit: “Steveoc 86”/Wikimedia Commons)

Members of the phylum Craniata/Vertebrata display the five characteristic features of the chordates; however, members of this group also share derived characteristics that distinguish them from invertebrate chordates. Vertebrates are named for the vertebral column, composed of vertebrae—a series of separate, irregularly shaped bones joined together to form a backbone (Figure). Initially, the vertebrae form in segments around the embryonic notochord, but eventually replace it in adults. In most derived vertebrates, the notochord becomes the nucleus pulposus of the intervertebral discs that cushion and support adjacent vertebrae.

Photo shows a fish skeleton with a vertebral column extending back from the skull.
A vertebrate skeleton. Vertebrata are characterized by the presence of a backbone, such as the one that runs through the middle of this fish. All vertebrates are in the Craniata clade and have a cranium. (credit: Ernest V. More; taken at Smithsonian Museum of Natural History, Washington, D.C.)

The relationship of the vertebrates to the invertebrate chordates has been a matter of contention, but although these cladistic relationships are still being examined, it appears that the Craniata/Vertebrata are a monophyletic group that shares the five basic chordate characteristics with the other two subphyla, Urochordata and Cephalochordata. Traditional phylogenies place the cephalochordates as a sister clade to the chordates, a view that has been supported by most current molecular analyses. This hypothesis is further supported by the discovery of a fossil in China from the genus Haikouella. This organism seems to be an intermediate form between cephalochordates and vertebrates. The Haikouella fossils are about 530 million years old and appear similar to modern lancelets. These organisms had a brain and eyes, as do vertebrates, but lack the skull found in craniates.Chen, J. Y., Huang, D. Y., and Li, C. W., “An early Cambrian craniate-like chordate,” Nature 402 (1999): 518–522, doi:10.1038/990080. This evidence suggests that vertebrates arose during the Cambrian explosion.

Vertebrates are the largest group of chordates, with more than 62,000 living species, which are grouped based on anatomical and physiological traits. More than one classification and naming scheme is used for these animals. Here we will consider the traditional groups Agnatha, Chondrichthyes, Osteichthyes, Amphibia, Reptilia, Aves, and Mammalia, which constitute classes in the subphylum Vertebrata/Craniata. Virtually all modern cladists classify birds within Reptilia, which correctly reflects their evolutionary heritage. Thus, we now have the nonavian reptiles and the avian reptiles in our reptilian classification. We consider them separately only for convenience. Further, we will consider hagfishes and lampreys together as jawless fishes, the Agnatha, although emerging classification schemes separate them into chordate jawless fishes (the hagfishes) and vertebrate jawless fishes (the lampreys).

Animals that possess jaws are known as gnathostomes, which means “jawed mouth.” Gnathostomes include fishes and tetrapods. Tetrapod literally means “four-footed,” which refers to the phylogenetic history of various land vertebrates, even though in some of the tetrapods, the limbs may have been modified for purposes other than walking. Tetrapods include amphibians, reptiles, birds, and mammals, and technically could also refer to the extinct fishlike groups that gave rise to the tetrapods. Tetrapods can be further divided into two groups: amphibians and amniotes. Amniotes are animals whose eggs contain four extraembryonic membranes (yolk sac, amnion, chorion, and allantois) that provide nutrition and a water-retaining environment for their embryos. Amniotes are adapted for terrestrial living, and include mammals, reptiles, and birds.

Section Summary

The five characteristic features of chordates present during some time of their life cycles are a notochord, a dorsal hollow tubular nerve cord, pharyngeal slits, endostyle/thyroid gland, and a post-anal tail. Chordata contains two clades of invertebrates: Urochordata (tunicates) and Cephalochordata (lancelets), together with the vertebrates in the Vertebrata/Craniata. Lancelets are suspension feeders that feed on phytoplankton and other microorganisms. Most tunicates live on the ocean floor and are suspension feeders. Which of the two invertebrate chordate clades is more closely related to the vertebrates continues to be debated. Vertebrata is named for the vertebral column, which is a feature of almost all members of this clade. The name Craniata (organisms with a cranium) is considered to be synonymous with Vertebrata.

Art Connections

Figure Which of the following statements about common features of chordates is true?

  1. The dorsal hollow nerve cord is part of the chordate central nervous system.
  2. In vertebrate fishes, the pharyngeal slits become the gills.
  3. Humans are not chordates because humans do not have a tail.
  4. Vertebrates do not have a notochord at any point in their development; instead, they have a vertebral column.


Figure A

Review Questions

Which of the following is not contained in phylum Chordata?

  1. Cephalochordata
  2. Echinodermata
  3. Urochordata
  4. Vertebrata



Which group of invertebrates is most closely related to vertebrates?

  1. cephalochordates
  2. echinoderms
  3. arthropods
  4. urochordates



Hagfish, lampreys, sharks, and tuna are all chordates that can also be classified into which group?

  1. Craniates
  2. Vertebrates
  3. Cartilaginous fish
  4. Cephalocordata



Free Response

What are the characteristic features of the chordates?


The characteristic features of the phylum Chordata are a notochord, a dorsal hollow nerve cord, pharyngeal slits, and a post-anal tail.

What is the structural advantage of the notochord in the human embryo? Be sure to compare the notochord with the corresponding structure in adults.


The notochord is a flexible structure that provides support for the embryo’s body and formation of the neural tube. In the adults, the notochord has been replaced by the bony, rigid vertebral column. This loss of flexibility restricts the movement of adult humans, and would make it unlikely that the embryo would fit within the small space it is allotted inside the uterus.